Jalview is a multiple alignment editor written entirely in java. It was initially to be used as a visualization tool for the Pfam CORBA server and client at the EBI but is available as a general purpose alignment editor.
Jalview为用Java语言写的多序列比对编辑器，需要Java运行环境。
JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment using the affine gap penalty model.
基于Smith-Waterman算法的序列比对软件，JAVA语言写成。
